The Major Architects of Chromatin: Architectural Proteins in Bacteria, Archaea and Eukaryotes, Critical Reviews in Biochemistry and Molecular Biology, vol.178, issue.10, pp.393-418, 2008. ,
DOI : 10.1126/science.1063127
Epigenetic responses to environmental change and their evolutionary implications, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.390, issue.4, pp.3403-3418, 1534. ,
DOI : 10.1038/ncb1110
The Adaptive Advantage of Phenotypic Memory in Changing Environments, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.350, issue.1332, pp.133-141, 1332. ,
DOI : 10.1098/rstb.1995.0147
Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation, Science, vol.328, issue.5980, pp.916-919, 2010. ,
DOI : 10.1126/science.1186366
Conservation and divergence of methylation patterning in plants and animals, Proceedings of the National Academy of Sciences, vol.107, issue.19, pp.8689-8694, 2010. ,
DOI : 10.1073/pnas.1002720107
Absence of cytosine methylation at C-C-G-G and G-C-G-C sites in the rDNA coding regions and intervening sequences of Drosophila and the rDNA of other higher insects, Nucleic Acids Research, vol.6, issue.9, pp.2987-2995, 1979. ,
DOI : 10.1093/nar/6.9.2987
DNA, FEBS Letters, vol.95, issue.1, pp.148-152, 1982. ,
DOI : 10.1016/0014-5793(82)80723-0
Caenorhabditis elegans DNA does not contain 5-methylcytosine at any time during development or aging, Nucleic Acids Res, issue.16, pp.146711-6719, 1986. ,
DOI : 10.1093/nar/14.16.6711
URL : http://doi.org/10.1093/nar/14.16.6711
The Genome of the Stick Insect Medauroidea extradentata Is Strongly Methylated within Genes and Repetitive DNA, PLoS ONE, vol.25, issue.9, p.7223, 2009. ,
DOI : 10.1371/journal.pone.0007223.t003
Correction: The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers, PLoS Biology, vol.9, issue.1, p.1000506, 2010. ,
DOI : 10.1371/annotation/2db9ee19-faa4-43f2-af7a-c8aeacca8037
DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas), BMC Genomics, vol.11, issue.1 ,
DOI : 10.1186/1471-2164-11-483
A functional DNA methylation system in the pea aphid, Acyrthosiphon pisum, Insect Molecular Biology, vol.39, issue.7, pp.215-228, 2010. ,
DOI : 10.1111/j.1365-2583.2009.00974.x
Patterns of DNA Methylation in Development, Division of Labor and Hybridization in an Ant with Genetic Caste Determination, PLoS ONE, vol.7, issue.8, p.42433 ,
DOI : 10.1371/journal.pone.0042433.t003
CpG methylation is targeted to transcription units in an invertebrate genome, Genome Research, vol.17, issue.5, pp.625-631, 2007. ,
DOI : 10.1101/gr.6163007
The Evolution of Invertebrate Gene Body Methylation, Molecular Biology and Evolution, vol.29, issue.8, pp.1907-1916 ,
DOI : 10.1093/molbev/mss062
Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly, Molecular Biology and Evolution, vol.29, issue.1, pp.219-227 ,
DOI : 10.1093/molbev/msr188
Genome-wide association between DNA methylation and alternative splicing in an invertebrate, BMC Genomics, vol.13, issue.1, p.480 ,
DOI : 10.1371/journal.pcbi.1000598
Nutritional Control of Reproductive Status in Honeybees via DNA Methylation, Science, vol.319, issue.5871, pp.3191827-1830, 2008. ,
DOI : 10.1126/science.1153069
Involvement of DNA methylation in memory processing in the honey bee, NeuroReport, vol.21, issue.12, pp.812-816, 2010. ,
DOI : 10.1097/WNR.0b013e32833ce5be
Reversible switching between epigenetic states in honeybee behavioral subcastes, Nature Neuroscience, vol.22, issue.10, pp.1371-1373 ,
DOI : 10.1093/bioinformatics/btp120
Epidemiology and control of human schistosomiasis in Tanzania, Parasites & Vectors, vol.5, issue.1, p.274, 2012. ,
DOI : 10.1016/j.pt.2006.05.001
Insights into the functional biology of schistosomes, Parasites & Vectors, vol.4, issue.1, p.203, 2011. ,
DOI : 10.1016/j.pt.2007.03.007
No evidence for large differences in genomic methylation between wild and hatchery steelhead(Oncorhynchus mykiss), Can J Fish Aquat Sci, vol.67, pp.217-224, 2010. ,
Dnmt2-dependent methylomes lack defined DNA methylation patterns, Proceedings of the National Academy of Sciences, vol.110, issue.21, pp.1108627-8631, 2013. ,
DOI : 10.1073/pnas.1306723110
Lack of DNA Methylation in Schistosoma mansoni, Experimental Parasitology, vol.98, issue.3, pp.162-166, 2001. ,
DOI : 10.1006/expr.2001.4630
Cytosine methylation regulates oviposition in the pathogenic blood fluke Schistosoma mansoni, Nature Communications, vol.142, p.424, 2011. ,
DOI : 10.1590/S0074-02761998000700060
Specific versus Non-Specific Immune Responses in an Invertebrate Species Evidenced by a Comparative de novo Sequencing Study, PLoS ONE, vol.32, issue.3, p.32512 ,
DOI : 10.1371/journal.pone.0032512.s006
URL : https://hal.archives-ouvertes.fr/halsde-00700368
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences, Genome Biology, vol.11, issue.8, p.167, 2010. ,
DOI : 10.1186/gb-2010-11-8-r86
Nimbus (BgI): An active non-LTR retrotransposon of the Schistosoma mansoni snail host Biomphalaria glabrata, International Journal for Parasitology, vol.37, issue.12, pp.371307-1318, 2007. ,
DOI : 10.1016/j.ijpara.2007.04.002
Reversing the Resistance Phenotype of the Biomphalaria glabrata Snail Host Schistosoma mansoni Infection by Temperature Modulation, PLoS Pathogens, vol.55, issue.3, p.1002677 ,
DOI : 10.1371/journal.ppat.1002677.g007
Bisulfite genomic sequencing: systematic investigation of critical experimental parameters, Nucleic Acids Research, vol.29, issue.13, pp.65-65, 2001. ,
DOI : 10.1093/nar/29.13.e65
Bisulfite conversion of genomic DNA for methylation analysis: protocol simplification with higher recovery applicable to limited samples and increased throughput, Analytical Biochemistry, vol.326, issue.2, pp.278-280, 2004. ,
DOI : 10.1016/j.ab.2003.11.020
MethPrimer: designing primers for methylation PCRs, Bioinformatics, vol.18, issue.11, pp.1427-1431, 2002. ,
DOI : 10.1093/bioinformatics/18.11.1427
Combined Bisulfite Restriction Analysis (COBRA), Methods Mol Biol, vol.200, pp.71-85, 2002. ,
DOI : 10.1385/1-59259-182-5:071
MethTools--a toolbox to visualize and analyze DNA methylation data, Nucleic Acids Research, vol.28, issue.5, pp.1053-1058, 2000. ,
DOI : 10.1093/nar/28.5.1053
DNA methylation in insects: on the brink of the epigenomic era, Insect Molecular Biology, vol.39, issue.5, pp.553-565, 2011. ,
DOI : 10.1111/j.1365-2583.2011.01092.x
Evidence for Widespread Genomic Methylation in the Migratory Locust, Locusta migratoria (Orthoptera: Acrididae), PLoS ONE, vol.17, issue.8, p.28167, 2011. ,
DOI : 10.1371/journal.pone.0028167.s002
Model-Based Clustering, Discriminant Analysis, and Density Estimation, Journal of the American Statistical Association, vol.97, issue.458, pp.611-631, 2002. ,
DOI : 10.1198/016214502760047131
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.27.5734
Scrucca L: mclust Version 4 for R: Normal Mixture Modeling for Model-Based Clustering, Classification, and Density Estimation, 2012. ,
DOI : 10.1007/s00357-007-0004-5
URL : http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.142.8693
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research, Bioinformatics, vol.21, issue.18, pp.3674-3676, 2005. ,
DOI : 10.1093/bioinformatics/bti610
Methylation of tRNAAsp by the DNA methyltransferasehomolog Dnmt2, Science, issue.5759, pp.311395-398, 2006. ,
The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain, Science, vol.324, issue.5929, pp.929-930, 2009. ,
DOI : 10.1126/science.1169786
Advances in DNA methylation: 5-hydroxymethylcytosine revisited, Clinica Chimica Acta, vol.412, issue.11-12, pp.11-12831 ,
DOI : 10.1016/j.cca.2011.02.013
The methyl-CpG binding domain and the evolving role of DNA methylation in animals, Trends in Genetics, vol.19, issue.5, pp.269-277, 2003. ,
DOI : 10.1016/S0168-9525(03)00080-5
Two novel elements (CFG1 and PYG1) of Mag lineage of Ty3/Gypsy retrotransposons from Zhikong scallop (Chlamys farreri) and Japanese scallop (Patinopecten yessoensis), Genetica, vol.9, issue.1, pp.37-46, 2008. ,
DOI : 10.1007/s10709-007-9180-3
The correlation of genome size and DNA methylation rate in metazoans, Theory in Biosciences, vol.328, issue.Suppl 2, pp.47-60 ,
DOI : 10.1007/s12064-012-0167-y
Characterization of genome methylation patterns in the desert locust Schistocerca gregaria, Journal of Experimental Biology, vol.216, issue.8, pp.1423-1429 ,
DOI : 10.1242/jeb.080754
Single base???resolution methylome of the silkworm reveals a sparse epigenomic map, Nature Biotechnology, vol.24, issue.5, pp.516-520, 2010. ,
DOI : 10.1038/nbt.1626
De novo CpG Island Methylation in Human Cancer Cells, Cancer Research, vol.66, issue.2, pp.682-692, 2006. ,
DOI : 10.1158/0008-5472.CAN-05-1980
Functional CpG Methylation System in a Social Insect, Science, vol.314, issue.5799, pp.314645-647, 2006. ,
DOI : 10.1126/science.1135213
Isolation and analysis of sequences showing sex-specific cytosine methylation in the mealybug Planococcus lilacinus, Molecular Genetics and Genomics, vol.15, issue.6, pp.557-568, 2005. ,
DOI : 10.1007/s00438-005-0004-9
Retrotransposon silencing and telomere integrity in somatic cells of Drosophila depends on the cytosine-5 methyltransferase DNMT2, Nature Genetics, vol.41, issue.6, pp.41696-702, 2009. ,
DOI : 10.1038/ncb1514
Molecular basis of base substitution hotspots in Escherichia coli, Nature, vol.35, issue.5673, pp.775-780, 1978. ,
DOI : 10.1021/bi00871a026
DNA methylation and the frequency of CpG in animal DNA, Nucleic Acids Research, vol.8, issue.7, pp.1499-1504, 1980. ,
DOI : 10.1093/nar/8.7.1499
Evidence of a conserved functional role for DNA methylation in termites, Insect Molecular Biology, vol.10, issue.2, pp.143-154 ,
DOI : 10.1111/imb.12010
DNA methylation is widespread and associated with differential gene expression in castes of the honeybee, Apis mellifera, Proceedings of the National Academy of Sciences, vol.106, issue.27, pp.11206-11211, 2009. ,
DOI : 10.1073/pnas.0900301106