L. Hillier, G. Marth, A. Quinlan, D. Dooling, G. Fewell et al., Whole-genome sequencing and variant discovery in C. elegans, Nature Methods, vol.8, issue.2, pp.183-188, 2008.
DOI : 10.1101/gr.GR-1471R

R. Short, Presidential Address: Sex and the Single Schistosome, The Journal of Parasitology, vol.69, issue.1, pp.3-22, 1983.
DOI : 10.2307/3281269

C. Grevelding, Genomic instability in Schistosoma mansoni, Molecular and Biochemical Parasitology, vol.101, issue.1-2, pp.207-216, 1999.
DOI : 10.1016/S0166-6851(99)00078-X

J. Boissier and H. Mone, Experimental observations on the sex ratio of adult Schistosoma mansoni, with comments on the natural male bias, Parasitology, vol.121, issue.4, pp.379-383, 2000.
DOI : 10.1017/S0031182099006393
URL : https://hal.archives-ouvertes.fr/hal-01495938

C. Cosseau, A. Azzi, K. Smith, M. Freitag, G. Mitta et al., Native chromatin immunoprecipitation (N-ChIP) and ChIP-Seq of Schistosoma mansoni: Critical experimental parameters, Molecular and Biochemical Parasitology, vol.166, issue.1, pp.70-76, 2009.
DOI : 10.1016/j.molbiopara.2009.02.015
URL : https://hal.archives-ouvertes.fr/halsde-00459175

M. Berriman, B. Haas, P. Loverde, R. Wilson, G. Dillon et al., The genome of the blood fluke Schistosoma mansoni, Nature, vol.46, issue.7253, pp.460352-358, 2009.
DOI : 10.1038/nature08160

A. Fejes, G. Robertson, M. Bilenky, R. Varhol, M. Bainbridge et al., FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology, Bioinformatics, vol.24, issue.15, pp.241729-1730, 2008.
DOI : 10.1093/bioinformatics/btn305

N. Fahlgren, C. Sullivan, K. Kasschau, E. Chapman, J. Cumbie et al., Computational and analytical framework for small RNA profiling by high-throughput sequencing, RNA, vol.15, issue.5, pp.992-1002, 2009.
DOI : 10.1261/rna.1473809

G. Benson, Tandem repeats finder: a program to analyze DNA sequences, Nucleic Acids Research, vol.27, issue.2, pp.573-580, 1999.
DOI : 10.1093/nar/27.2.573

A. Zerlotini, M. Heiges, H. Wang, R. Moraes, A. Dominitini et al., SchistoDB: a Schistosoma mansoni genome resource, Nucleic Acids Research, vol.37, issue.Database, pp.579-582, 2009.
DOI : 10.1093/nar/gkn681

P. Webster, T. Mansour, and D. Bieber, Isolation of a female-specific, highly repeated Schistosoma mansoni DNA probe and its use in an assay of cercarial sex, Molecular and Biochemical Parasitology, vol.36, issue.3, pp.217-222, 1989.
DOI : 10.1016/0166-6851(89)90169-2

A. Drew and P. Brindley, Female-specific sequences isolated from Schistosoma mansoni by representational difference analysis, Molecular and Biochemical Parasitology, vol.71, issue.2, pp.173-181, 1995.
DOI : 10.1016/0166-6851(95)00048-6

R. Li, Y. Li, K. Kristiansen, and J. Wang, SOAP: short oligonucleotide alignment program, Bioinformatics, vol.24, issue.5, pp.713-714, 2008.
DOI : 10.1093/bioinformatics/btn025

D. Campagna, A. Albiero, A. Bilardi, E. Caniato, C. Forcato et al., PASS: a program to align short sequences, Bioinformatics, vol.25, issue.7, pp.967-968, 2009.
DOI : 10.1093/bioinformatics/btp087

S. Beltran, R. Galinier, J. Allienne, and J. Boissier, Cheap, rapid and efficient DNA extraction method to perform multilocus microsatellite genotyping on all Schistosoma mansoni stages, Mem??rias do Instituto Oswaldo Cruz, vol.103, issue.5, pp.501-503, 2008.
DOI : 10.1590/S0074-02762008000500017
URL : https://hal.archives-ouvertes.fr/halsde-00344405

A. Jeffreys, R. Neumann, and V. Wilson, Repeat unit sequence variation in minisatellites: A novel source of DNA polymorphism for studying variation and mutation by single molecule analysis, Cell, vol.60, issue.3, pp.473-485, 1990.
DOI : 10.1016/0092-8674(90)90598-9

R. Demarco, A. Kowaltowski, A. Machado, M. Soares, C. Gargioni et al., Saci-1, -2, and -3 and Perere, four novel retrotransposons with high transcriptional activities from the human parasite Schistosoma mansoni, Journal of Virology, issue.6, pp.782967-2978, 2004.

J. Staelens, D. Rombaut, I. Vercauteren, B. Argue, J. Benzie et al., High-Density Linkage Maps and Sex-Linked Markers for the Black Tiger Shrimp (Penaeus monodon), Genetics, vol.179, issue.2, pp.917-925, 2008.
DOI : 10.1534/genetics.107.080150

C. Grevelding, M. Doenhoff, W. Kunz, and C. Grevelding, The female-specific W1 sequence of the Puerto Rican strain of Schistosoma mansoni occurs in both genders of a Liberian strain, Molecular and Biochemical Parasitology, vol.71, issue.2, pp.269-272222, 1995.
DOI : 10.1016/0166-6851(94)00058-U

J. Chen, Y. Wang, Y. Yue, X. Xia, Q. Du et al., A novel male-specific DNA sequence in the common carp, Cyprinus carpio. Molecular and cellular probes, pp.235-239, 2009.

Y. Horng and M. Huang, Male-specific DNA sequences in pigs, Theriogenology, vol.59, issue.3-4, pp.841-848, 2003.
DOI : 10.1016/S0093-691X(02)01150-0

K. Scribner, M. Petersen, R. Fields, S. Talbot, J. Pearce et al., Sex-biased gene flow in spectacled eiders (Anatidae): inferences from molecular markers with contrasting modes of inheritance, Evolution; international journal of organic evolution, issue.10, pp.552105-2115, 2001.

G. Yannic, P. Basset, and J. Hausser, ), inferred with autosomal and sex-specific markers, Molecular Ecology, vol.47, issue.Suppl. 1, pp.4118-4151, 2008.
DOI : 10.1111/j.1365-294X.2008.03888.x